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DTSTART;TZID=America/New_York:20220121T130000
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SUMMARY:RNA-Seq workshop Part 1
DESCRIPTION:Computational Genomics Series by OARC \nAmarel account: You need an Amarel account to participate in the lab section Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nTo connect to the cluster: Please test and be sure it is working for you. Check the user-guide of how to get on to the cluster. \nIf you have questions or need help\, please contact Janet Chang. \n\nIntroduction to RNA-Seq\n\nIssues to consider\nExperimental design\n(read length\, depth\, replicates..)\nStatistics for RNASeq – power analysis\n\n\nQC and Raw read QC\n\nDaily utilities\nFastq QC and Interpretation\nQuality trim-Trimmomatics\n\n\nRead mapping and Read counts\n\nAligners—tophat\, bowtie\, bwa\, Star\, HISAT2\,\nSalmon\nHtSeq-count/STAR quantMode geneCounts…\nPost mapping QC\n\n\n\nLab Exercise: FastQC; seqtk; Trimmomatic; HISAT2;
URL:https://oarc.rutgers.edu/event/rna-seq-workshop-part-1/
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