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X-WR-CALNAME:Office of Advanced Research Computing
X-ORIGINAL-URL:https://oarc.rutgers.edu
X-WR-CALDESC:Events for Office of Advanced Research Computing
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TZNAME:EDT
DTSTART:20210314T070000
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DTSTART:20211107T060000
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BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211105T140000
DTEND;TZID=America/New_York:20211105T170000
DTSTAMP:20260424T234802
CREATED:20210813T034730Z
LAST-MODIFIED:20210813T034807Z
UID:5418-1636120800-1636131600@oarc.rutgers.edu
SUMMARY:Python for Big Data
DESCRIPTION:Register to attend the workshop at the bottom of this page. Zoom link will be emailed after filling out the registration form. \nAmarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the python tools and techniques to work with big data that demand CPU and memory.  It covers the basics of Numpy\, Pandas\, Numba\, and Dask. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.Register to attend the workshop:\n	Notice: JavaScript is required for this content.
URL:https://oarc.rutgers.edu/event/python-for-big-data-11-5-21/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211116T080000
DTEND;TZID=America/New_York:20211117T190000
DTSTAMP:20260424T234803
CREATED:20210330T162835Z
LAST-MODIFIED:20210330T162842Z
UID:4665-1637049600-1637175600@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Anticipated monthly maintenance schedule March 2021 - January 2022: \nMAR 19-20-21 (3/20 & 3/21 Hill Data Center maintenance\, which will affect Amarel users)\nAPR 20-21\nMAY 18-19\nJUN 15-16\nJUL 20-21\nAUG 17-18\nSEP 21-22\nOCT 19-20\nNOV 16-17\nDEC 21-22\nJAN 18-19 \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-11-16-21/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211119T140000
DTEND;TZID=America/New_York:20211119T170000
DTSTAMP:20260424T234803
CREATED:20210813T035905Z
LAST-MODIFIED:20210813T035943Z
UID:5414-1637330400-1637341200@oarc.rutgers.edu
SUMMARY:Machine Learning with Python and Scikit-Learn
DESCRIPTION:Register to attend the workshop at the bottom of this page. Zoom link will be emailed after filling out the registration form. \nAmarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: In this three hour workshop\, we will go through the basics of unsupervised and supervised methods\, discuss some of the popular models such as Support Vector Machines\, Decision Trees\, and Random Forest\, and show how these models work for classification and regression problems. \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.\n\nRegister to attend the workshop:\n\n	Notice: JavaScript is required for this content.
URL:https://oarc.rutgers.edu/event/machine-learning-with-python-and-scikit-learn-11-19-21/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211202T130000
DTEND;TZID=America/New_York:20211202T160000
DTSTAMP:20260424T234803
CREATED:20211129T202732Z
LAST-MODIFIED:20211129T203815Z
UID:6133-1638450000-1638460800@oarc.rutgers.edu
SUMMARY:Workshop 5. Social Networks (graphs) - theory and examples of medical applications
DESCRIPTION:Branimir Ljubic presents the workshop/seminar: “Social Networks (graphs) – theory and examples of medical applications” within the series of workshops/seminars: “Clinical informatics\, Data science in medicine\, Advanced computing.” This workshop/seminar will cover Social Networks (graphs). \n\nRegister to attend the workshop:\n\n	Notice: JavaScript is required for this content.
URL:https://oarc.rutgers.edu/event/social-networks-workshop-5/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211209T130000
DTEND;TZID=America/New_York:20211209T170000
DTSTAMP:20260424T234803
CREATED:20211026T200606Z
LAST-MODIFIED:20211130T190741Z
UID:5927-1639054800-1639069200@oarc.rutgers.edu
SUMMARY:Enabling protein structure prediction with artificial intelligence at Rutgers and beyond
DESCRIPTION:Learning objectives\nThis Institute for Quantitative Biomedicine Crash Course will present a broad overview of how Artificial Intelligence/Machine Learning (AI/ML) methods are being used for de novo protein structure prediction and provide hands-on experience with both AlphaFold2 and RoseTTAFold. \nCASP14 revealed that AlphaFold2\, developed by Google DeepMind\, Inc.\, can predict three dimensional structures of small globular proteins with accuracies comparable to experimental methods. RoseTTAFold\, developed at the University of Washington/Howard Hughes Medical Institute\, approaches AlphaFold2 in terms of prediction accuracy while requiring fewer computational resources. \nIn this Crash Course\, expert speakers will provide a solid foundation on the role of AI/ML in structural biology and showcase ongoing research efforts at Rutgers. During the hands-on tutorial\, participants will learn how to utilize these new computational tools to compute structure models from amino acid sequences and download precomputed structure models from the AlphaFoldDB database. Local computing resources (Rutgers University Amarel Cluster) and access to Google Colab and the RoseTTAFold server will be made available during the hands-on session. \nCo-organizers: Balamurugan Desinghu\, Ph.D. and Stephen K. Burley\, M.D.\, D.Phil \nView schedule [PDF] \nRegister for event
URL:https://oarc.rutgers.edu/event/enabling-protein-structure-prediction-with-artificial-intelligence-at-rutgers-and-beyond/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211210T140000
DTEND;TZID=America/New_York:20211210T170000
DTSTAMP:20260424T234803
CREATED:20210813T041055Z
LAST-MODIFIED:20210813T191106Z
UID:5428-1639144800-1639155600@oarc.rutgers.edu
SUMMARY:Deep Learning with Python and Keras
DESCRIPTION:Register to attend the workshop at the bottom of this page. Zoom link will be emailed after filling out the registration form. \nAmarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the basics of Deep Learning with Python and Keras including data preparation\, artificial neural networks (ANN)\, Convolutional Neural Networks (CNN)\, and Recurrent Neural Networks (RNN). \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.\n\nRegister to attend the workshop:\n\n	Notice: JavaScript is required for this content.
URL:https://oarc.rutgers.edu/event/deep-learning-with-python-and-keras-12-10-21/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20211221T080000
DTEND;TZID=America/New_York:20211222T190000
DTSTAMP:20260424T234803
CREATED:20210330T163611Z
LAST-MODIFIED:20210330T163617Z
UID:4668-1640073600-1640199600@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Anticipated monthly maintenance schedule March 2021 - January 2022: \nMAR 19-20-21 (3/20 & 3/21 Hill Data Center maintenance\, which will affect Amarel users)\nAPR 20-21\nMAY 18-19\nJUN 15-16\nJUL 20-21\nAUG 17-18\nSEP 21-22\nOCT 19-20\nNOV 16-17\nDEC 21-22\nJAN 18-19 \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-12-21-21/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220107T140000
DTEND;TZID=America/New_York:20220107T170000
DTSTAMP:20260424T234803
CREATED:20211130T153520Z
LAST-MODIFIED:20221128T152923Z
UID:6142-1641564000-1641574800@oarc.rutgers.edu
SUMMARY:Intro to Linux Command Line
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This 3-hour workshop offers a brief introduction to using the Linux operating system\, focusing on command-line operations. The primary objective is to provide beginner-level familiarity with using a Linux system for common research computing tasks. Linux systems (e.g.\, workstations\, remote servers\, computing clusters) can be thought of as the foundation of research computing. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Bala Desinghu.
URL:https://oarc.rutgers.edu/event/intro-to-linux-command-line-1-7-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220111T080000
DTEND;TZID=America/New_York:20220112T190000
DTSTAMP:20260424T234803
CREATED:20210416T184318Z
LAST-MODIFIED:20220105T215347Z
UID:4736-1641888000-1642014000@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Each maintenance period is expected to begin at about 08:00 ET on the first day and end by about 19:00 ET on the 2nd day. \n2022 anticipated maintenance schedule (all dates subject to change):\nJAN 11 & 12 \nFEB 15 & 16\nMAR 15 & 16\nAPR 19 & 20\nMAY 17 & 18\nJUN 21 & 22\nJUL 19 & 20\nAUG 16 & 17\nSEP 20 & 21\nOCT 18 & 19\nNOV 15 & 16\nDEC 20 & 21 \nMaintenance is usually scheduled for weekdays because it often involves coordination with University facilities teams or external vendors. There may also be times when Amarel must be unavailable due to externally-scheduled data center facilities\, power\, or telecommunications maintenance. When this happens\, we will do our best to avoid adding to a month’s downtime with our own maintenance work (e.g.\, by working in parallel or postponing some tasks). \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-1-11-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220114T140000
DTEND;TZID=America/New_York:20220114T170000
DTSTAMP:20260424T234803
CREATED:20211130T155415Z
LAST-MODIFIED:20221128T153020Z
UID:6145-1642168800-1642179600@oarc.rutgers.edu
SUMMARY:Intro to the Amarel Cluster
DESCRIPTION:Amarel account: Apply here as soon as possible. You must have an Amarel account set up before the workshop.  \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This fast-paced 3-hour short course offers a brief introduction to using a Linux cluster. The goal is to help everyone make those first few steps toward productively using a Linux cluster for research — all members of the Rutgers community have free access to the Amarel Cluster. The workshop covers the basics of HPC Cluster\, Web access to the cluster\, SLURM\, File System and Storage\, and Setting up environment for the Software Stacks. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Bala Desinghu.
URL:https://oarc.rutgers.edu/event/intro-to-the-amarel-cluster-1-14-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220121T130000
DTEND;TZID=America/New_York:20220121T163000
DTSTAMP:20260424T234803
CREATED:20211108T212521Z
LAST-MODIFIED:20221128T153404Z
UID:6030-1642770000-1642782600@oarc.rutgers.edu
SUMMARY:RNA-Seq workshop Part 1
DESCRIPTION:Computational Genomics Series by OARC \nAmarel account: You need an Amarel account to participate in the lab section Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nTo connect to the cluster: Please test and be sure it is working for you. Check the user-guide of how to get on to the cluster. \nIf you have questions or need help\, please contact Janet Chang. \n\nIntroduction to RNA-Seq\n\nIssues to consider\nExperimental design\n(read length\, depth\, replicates..)\nStatistics for RNASeq – power analysis\n\n\nQC and Raw read QC\n\nDaily utilities\nFastq QC and Interpretation\nQuality trim-Trimmomatics\n\n\nRead mapping and Read counts\n\nAligners—tophat\, bowtie\, bwa\, Star\, HISAT2\,\nSalmon\nHtSeq-count/STAR quantMode geneCounts…\nPost mapping QC\n\n\n\nLab Exercise: FastQC; seqtk; Trimmomatic; HISAT2;
URL:https://oarc.rutgers.edu/event/rna-seq-workshop-part-1/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220124T130000
DTEND;TZID=America/New_York:20220124T163000
DTSTAMP:20260424T234803
CREATED:20211108T221526Z
LAST-MODIFIED:20221128T153516Z
UID:6046-1643029200-1643041800@oarc.rutgers.edu
SUMMARY:RNA-Seq workshop part 2
DESCRIPTION:Computational Genomics Series by OARC \nAmarel account: You need an Amarel account to participate in the lab section Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nTo connect to the cluster: Please test and be sure it is working for you. Check the user-guide of how to get on to the cluster. \nIf you have questions or need help\, please contact Janet Chang. \n\nData processing and filtering\n\nIntroduction to R and Bioconductor\nData processing–filtering\nNormalization\n\n\nQuantification and Differential expression\n\nExpression Quantification\nStatistical Models\nMultiple test correction\n\n\nAnalysis QC (Sample QC)\n\nClustering\nPCA\nHeatmap\nVolcano plot\n\n\n\nLab Exercise: data preparation; DE analysis with edgeR;\nPCA\, Clustering\, heatmap\, Volcano plot…
URL:https://oarc.rutgers.edu/event/rna-seq-workshop-part-2/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220128T130000
DTEND;TZID=America/New_York:20220128T163000
DTSTAMP:20260424T234803
CREATED:20211109T134130Z
LAST-MODIFIED:20221128T153850Z
UID:6057-1643374800-1643387400@oarc.rutgers.edu
SUMMARY:RNA-Seq workshop part 3
DESCRIPTION:Computational Genomics Series by OARC \nAmarel account: You need an Amarel account to participate in the lab section Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nTo connect to the cluster: Please test and be sure it is working for you. Check the user-guide of how to get on to the cluster. \nIf you have questions or need help\, please contact Janet Chang. \n\nFunctional analysis\n\nGO Term Annotation and Enrichment Test\nGene Set Enrichment Analysis and GSEA\nOverview of Pathway analysis\nOverview of Co-expression/network analysis\n\n\nID mapping & conversion\n\ng:profiler\nEnsembl Biomart\nSynergizer\nPICR\n\n\nVisualization\n\nLab Exercise: GO analysis\, GSEA analysis\, term\nconversion; IGV\, SparK
URL:https://oarc.rutgers.edu/event/rna-seq-workshop-part-3/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220204T140000
DTEND;TZID=America/New_York:20220204T170000
DTSTAMP:20260424T234803
CREATED:20211130T165745Z
LAST-MODIFIED:20221128T154043Z
UID:6149-1643983200-1643994000@oarc.rutgers.edu
SUMMARY:Intro to Python
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the basics of python programming including data types\, conditionals\, functions\, and python in HPC environment. \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/intro-to-python-2-4-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220215T080000
DTEND;TZID=America/New_York:20220216T190000
DTSTAMP:20260424T234803
CREATED:20220105T213419Z
LAST-MODIFIED:20220105T213428Z
UID:6325-1644912000-1645038000@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Each maintenance period is expected to begin at about 08:00 ET on the first day and end by about 19:00 ET on the 2nd day. \n2022 anticipated maintenance schedule (all dates subject to change):\nJAN 11 & 12 (one week earlier)\nFEB 15 & 16\nMAR 15 & 16\nAPR 19 & 20\nMAY 17 & 18\nJUN 21 & 22\nJUL 19 & 20\nAUG 16 & 17\nSEP 20 & 21\nOCT 18 & 19\nNOV 15 & 16\nDEC 20 & 21 \nMaintenance is usually scheduled for weekdays because it often involves coordination with University facilities teams or external vendors. There may also be times when Amarel must be unavailable due to externally-scheduled data center facilities\, power\, or telecommunications maintenance. When this happens\, we will do our best to avoid adding to a month’s downtime with our own maintenance work (e.g.\, by working in parallel or postponing some tasks). \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-2-15-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220218T140000
DTEND;TZID=America/New_York:20220218T170000
DTSTAMP:20260424T234803
CREATED:20211130T221546Z
LAST-MODIFIED:20221128T154203Z
UID:6175-1645192800-1645203600@oarc.rutgers.edu
SUMMARY:Python for Big Data
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the python tools and techniques to work with big data that demand CPU and memory.  It covers the basics of Numpy\, Pandas\, Numba\, and Dask. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/python-for-big-data-2-18-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220311T140000
DTEND;TZID=America/New_York:20220311T170000
DTSTAMP:20260424T234803
CREATED:20211130T222453Z
LAST-MODIFIED:20221128T154854Z
UID:6179-1647007200-1647018000@oarc.rutgers.edu
SUMMARY:Machine Learning with Python and Scikit-Learn
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: In this three hour workshop\, we will go through the basics of unsupervised and supervised methods\, discuss some of the popular models such as Support Vector Machines\, Decision Trees\, and Random Forest\, and show how these models work for classification and regression problems. \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/machine-learning-with-python-and-scikit-learn-3-11-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220315T080000
DTEND;TZID=America/New_York:20220316T190000
DTSTAMP:20260424T234803
CREATED:20220105T213618Z
LAST-MODIFIED:20220105T215319Z
UID:6327-1647331200-1647457200@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Each maintenance period is expected to begin at about 08:00 ET on the first day and end by about 19:00 ET on the 2nd day. \n2022 anticipated maintenance schedule (all dates subject to change):\nJAN 11 & 12 \nFEB 15 & 16\nMAR 15 & 16\nAPR 19 & 20\nMAY 17 & 18\nJUN 21 & 22\nJUL 19 & 20\nAUG 16 & 17\nSEP 20 & 21\nOCT 18 & 19\nNOV 15 & 16\nDEC 20 & 21 \nMaintenance is usually scheduled for weekdays because it often involves coordination with University facilities teams or external vendors. There may also be times when Amarel must be unavailable due to externally-scheduled data center facilities\, power\, or telecommunications maintenance. When this happens\, we will do our best to avoid adding to a month’s downtime with our own maintenance work (e.g.\, by working in parallel or postponing some tasks). \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-3-15-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220324T140000
DTEND;TZID=America/New_York:20220324T170000
DTSTAMP:20260424T234803
CREATED:20220316T192708Z
LAST-MODIFIED:20221128T154941Z
UID:6851-1648130400-1648141200@oarc.rutgers.edu
SUMMARY:Intro to Amarel Cluster
DESCRIPTION:Amarel account: Apply here as soon as possible. You must have an Amarel account set up before the workshop.  \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This fast-paced 3-hour short course offers a brief introduction to using a Linux cluster. The goal is to help everyone make those first few steps toward productively using a Linux cluster for research — all members of the Rutgers community have free access to the Amarel Cluster. The workshop covers the basics of HPC Cluster\, Web access to the cluster\, SLURM\, File System and Storage\, and Setting up environment for the Software Stacks. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Paul Arias.
URL:https://oarc.rutgers.edu/event/intro-to-amarel-cluster-3-24-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220325T140000
DTEND;TZID=America/New_York:20220325T170000
DTSTAMP:20260424T234803
CREATED:20211130T222944Z
LAST-MODIFIED:20221128T155037Z
UID:6183-1648216800-1648227600@oarc.rutgers.edu
SUMMARY:Deep Learning with Python and Keras
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the basics of Deep Learning with Python and Keras including data preparation\, artificial neural networks (ANN)\, Convolutional Neural Networks (CNN)\, and Recurrent Neural Networks (RNN). \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/deep-learning-with-python-and-keras-3-25-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220405T140000
DTEND;TZID=America/New_York:20220405T170000
DTSTAMP:20260424T234803
CREATED:20220316T194122Z
LAST-MODIFIED:20221128T155213Z
UID:6855-1649167200-1649178000@oarc.rutgers.edu
SUMMARY:Intro to Amarel Cluster
DESCRIPTION:Amarel account: Apply here as soon as possible. You must have an Amarel account set up before the workshop.  \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This fast-paced 3-hour short course offers a brief introduction to using a Linux cluster. The goal is to help everyone make those first few steps toward productively using a Linux cluster for research — all members of the Rutgers community have free access to the Amarel Cluster. The workshop covers the basics of HPC Cluster\, Web access to the cluster\, SLURM\, File System and Storage\, and Setting up environment for the Software Stacks. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Paul Arias.
URL:https://oarc.rutgers.edu/event/intro-to-amarel-cluster-4-5-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220408T123000
DTEND;TZID=America/New_York:20220408T143000
DTSTAMP:20260424T234803
CREATED:20220314T205437Z
LAST-MODIFIED:20220331T165613Z
UID:6828-1649421000-1649428200@oarc.rutgers.edu
SUMMARY:Data Visualization with Python
DESCRIPTION:Data Visualization with Python Jupyter Notebooks: A Hands-on Introduction \nPresenters: Dr. Bala Desinghu\, Dr. Abhishek Tripathi and Dr. Jim Samuel \nThe session will consist of brief presentations\, with around 100 minutes of interactive work-along demo of data visualization with Jupyter Notebooks\, and end with Q&A. Participants will learn to create data visualizations and can opt to either access Rutgers University’s high-performance computing (HPC) platform/cloud or to run the code locally on their own computers. \n\nDr. Bala Desinghu\, Senior Scientist from OARC\, Rutgers University will provide an interactive introduction to data visualization with insights on the use of high-performance computing.\nDr. Abhishek Tripathi\, Associate Professor\, School of Business\, TCNJ\, will introduce the use of Python libraries such as Seaborn\, Plotly and Cufflinks for creating advanced and intera​ctive data visualizations.\nDr. Jim Samuel\, Associate Prof​e​ssor\, Rutgers Bloustein School\, will conclude the session with insights on the use of Artificial Intelligence for visualizations and language data visualizations.\n\nThis workshop is hosted by the RUCI Lab\, EJ Bloustein School and the Office of Advanced Research Computing (OARC)\, Rutgers University\, organized by Dr. Bala Desinghu and Dr. Jim Samuel in collaboration with our partners\, the Eastern Regional Network (ERN)\, the Northeast Big Data Innovation Hub (NEBDI Hub)\, and the New Jersey Big Data Alliance (NJBDA). \nThis workshop is sponsored by the MPI (Master of Public Informatics) Program at Bloustein. \n			\n				Register here
URL:https://oarc.rutgers.edu/event/data-visualization-with-python/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220419T080000
DTEND;TZID=America/New_York:20220420T190000
DTSTAMP:20260424T234803
CREATED:20220105T213817Z
LAST-MODIFIED:20220105T213826Z
UID:6329-1650355200-1650481200@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Each maintenance period is expected to begin at about 08:00 ET on the first day and end by about 19:00 ET on the 2nd day. \n2022 anticipated maintenance schedule (all dates subject to change):\nJAN 11 & 12 (one week earlier)\nFEB 15 & 16\nMAR 15 & 16\nAPR 19 & 20\nMAY 17 & 18\nJUN 21 & 22\nJUL 19 & 20\nAUG 16 & 17\nSEP 20 & 21\nOCT 18 & 19\nNOV 15 & 16\nDEC 20 & 21 \nMaintenance is usually scheduled for weekdays because it often involves coordination with University facilities teams or external vendors. There may also be times when Amarel must be unavailable due to externally-scheduled data center facilities\, power\, or telecommunications maintenance. When this happens\, we will do our best to avoid adding to a month’s downtime with our own maintenance work (e.g.\, by working in parallel or postponing some tasks). \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-4-19-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220422T140000
DTEND;TZID=America/New_York:20220422T170000
DTSTAMP:20260424T234803
CREATED:20220401T145307Z
LAST-MODIFIED:20221128T155304Z
UID:6954-1650636000-1650646800@oarc.rutgers.edu
SUMMARY:AI for Protein Design - AlphaFold2 and RoseTTAFold
DESCRIPTION:Amarel account: Apply here as soon as possible. You must have an Amarel account set up before the workshop.  \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This workshop will present a broad overview and hands-on session on how Artificial Intelligence/Machine Learning (AI/ML) methods are being used for de novo protein structure prediction and provide hands-on experience with both AlphaFold2 and RoseTTAFold. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Bala Desinghu.
URL:https://oarc.rutgers.edu/event/ai-for-protein-design-4-22-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220506T140000
DTEND;TZID=America/New_York:20220506T170000
DTSTAMP:20260424T234803
CREATED:20220401T152600Z
LAST-MODIFIED:20221128T155427Z
UID:6972-1651845600-1651856400@oarc.rutgers.edu
SUMMARY:Intro to the Amarel Cluster
DESCRIPTION:Amarel account: Apply here as soon as possible. You must have an Amarel account set up before the workshop.  \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This fast-paced 3-hour short course offers a brief introduction to using a Linux cluster. The goal is to help everyone make those first few steps toward productively using a Linux cluster for research — all members of the Rutgers community have free access to the Amarel Cluster. The workshop covers the basics of HPC Cluster\, Web access to the cluster\, SLURM\, File System and Storage\, and Setting up environment for the Software Stacks. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Bala Desinghu.
URL:https://oarc.rutgers.edu/event/intro-to-the-amarel-cluster-5-6-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220513T140000
DTEND;TZID=America/New_York:20220513T170000
DTSTAMP:20260424T234803
CREATED:20220401T162836Z
LAST-MODIFIED:20221128T155456Z
UID:6977-1652450400-1652461200@oarc.rutgers.edu
SUMMARY:Intro to Linux Command Line
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. Alternatively\, Windows 10 users can install the complete Windows Subsystem for Linux. \nWorkshop content: This 3-hour workshop offers a brief introduction to using the Linux operating system\, focusing on command-line operations. The primary objective is to provide beginner-level familiarity with using a Linux system for common research computing tasks. Linux systems (e.g.\, workstations\, remote servers\, computing clusters) can be thought of as the foundation of research computing. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please email Bala Desinghu. \nRegister to attend the workshop:
URL:https://oarc.rutgers.edu/event/intro-to-linux-command-line-5-13-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220517T080000
DTEND;TZID=America/New_York:20220518T190000
DTSTAMP:20260424T234803
CREATED:20220105T213936Z
LAST-MODIFIED:20220105T215508Z
UID:6331-1652774400-1652900400@oarc.rutgers.edu
SUMMARY:Amarel monthly maintenance
DESCRIPTION:Each maintenance period is expected to begin at about 08:00 ET on the first day and end by about 19:00 ET on the 2nd day. \n2022 anticipated maintenance schedule (all dates subject to change):\nJAN 11 & 12\nFEB 15 & 16\nMAR 15 & 16\nAPR 19 & 20\nMAY 17 & 18\nJUN 21 & 22\nJUL 19 & 20\nAUG 16 & 17\nSEP 20 & 21\nOCT 18 & 19\nNOV 15 & 16\nDEC 20 & 21 \nMaintenance is usually scheduled for weekdays because it often involves coordination with University facilities teams or external vendors. There may also be times when Amarel must be unavailable due to externally-scheduled data center facilities\, power\, or telecommunications maintenance. When this happens\, we will do our best to avoid adding to a month’s downtime with our own maintenance work (e.g.\, by working in parallel or postponing some tasks). \n			\n				Visit Amarel system status for more information
URL:https://oarc.rutgers.edu/event/amarel-monthly-maintenance-5-17-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220520T140000
DTEND;TZID=America/New_York:20220520T170000
DTSTAMP:20260424T234803
CREATED:20220401T175734Z
LAST-MODIFIED:20221128T155523Z
UID:5630-1653055200-1653066000@oarc.rutgers.edu
SUMMARY:Intro to Python
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the basics of python programming including data types\, conditionals\, functions\, and python in HPC environment. \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/intro-to-python-5-20-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220527T140000
DTEND;TZID=America/New_York:20220527T170000
DTSTAMP:20260424T234803
CREATED:20220401T182137Z
LAST-MODIFIED:20221128T155558Z
UID:7002-1653660000-1653670800@oarc.rutgers.edu
SUMMARY:Data Visualization with Python
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This workshop provides hands-on training on how to utilize packages like numpy\, pandas\, matplotlib\, plotly\, etc. to store\, process\, and visualize data. \n**NOTE** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/data-visualization-with-python-5-27-22/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/New_York:20220603T140000
DTEND;TZID=America/New_York:20220603T170000
DTSTAMP:20260424T234803
CREATED:20220401T175550Z
LAST-MODIFIED:20221128T155630Z
UID:6989-1654264800-1654275600@oarc.rutgers.edu
SUMMARY:Python for Big Data
DESCRIPTION:Amarel account: Apply here as soon as possible. \nVPN setup: You have to be connected on Rutgers’ network or be on VPN  to access Amarel resources. \nSSH setup: Windows users must install an SSH client like PuTTY or MobaXterm. \nWorkshop content: This three hour workshop focuses on learning the python tools and techniques to work with big data that demand CPU and memory.  It covers the basics of Numpy\, Pandas\, Numba\, and Dask. \n**Note** Just observing is welcome\, but to participate in hands-on activities\, you must have an Amarel account setup before the workshop. Please complete our web-based form at least 24 hours before the workshop (do this as soon as possible). \nIf you have questions or need help\, please contact Bala Desinghu.
URL:https://oarc.rutgers.edu/event/python-for-big-data-6-3-22/
END:VEVENT
END:VCALENDAR