Computational Genomics Series by OARC

Amarel account: You need an Amarel account to participate in the lab section Apply here as soon as possible.

VPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources.

To connect to the cluster: Please test and be sure it is working for you. Check the user-guide of how to get on to the cluster.

If you have questions or need help, please contact Janet Chang.

• Functional analysis
  • GO Term Annotation and Enrichment Test
  • Gene Set Enrichment Analysis and GSEA
  • Overview of Pathway analysis
  • Overview of Co-expression/network analysis
• ID mapping & conversion
  • g:profiler
  • Ensembl Biomart
  • Synergizer
  • PICR
• Visualization

Lab Exercise: GO analysis, GSEA analysis, term
conversion; IGV, SparK