Computational Genomics Series by OARC

Amarel account: You need an Amarel account to participate in the lab section Apply here as soon as possible.

VPN setup: You have to be connected on Rutgers’ network or be on VPN to access Amarel resources.

To connect to the cluster: Please test and be sure it is working for you. Check the user-guide of how to get on to the cluster.

If you have questions or need help, please contact Janet Chang.

• Data processing and filtering
  • Introduction to R and Bioconductor
  • Data processing–filtering
  • Normalization
• Quantification and Differential expression
  • Expression Quantification
  • Statistical Models
  • Multiple test correction
• Analysis QC (Sample QC)
  • Clustering
  • PCA
  • Heatmap
  • Volcano plot

Lab Exercise: data preparation; DE analysis with edgeR;
PCA, Clustering, heatmap, Volcano plot…