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Genomics Series1 — RNA-Seq Part I

May 11 @ 1:00 pm - 4:30 pm

Part I   Monday, May 11,  2020

1. Introduction to RNA-Seq  

  1. Issues to consider
  2. Experimental design (read length, depth, replicates..)
  3. Statistics for RNASeq

2. QC and Raw read QC

  1. Daily utilities
  2. Fastq QC and Interpretation
  3. Quality trim-Trimmomatics

3. Read mapping and Read counts

  1. Aligners—tophat, bowtie, bwa, Star, HISAT2.
  2. HtSeq-count/STAR quantMode geneCounts…
  3. Post mapping QC

Lab Exercise: FastQC, Trimmomatic; HISAT2, RSeQC;

Registration closed

Genomics Series1 — RNA-Seq Part I

Details

Date:
May 11
Time:
1:00 pm - 4:30 pm

Venue

webex ( link will be sent to those who registered before the webinar)

Organizer

OARC
Phone:
9739721004
Email:
yc759@oarc.rutgers.edu
Website:
https://oarc.rutgers.edu/